HL_7S1H_105

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1H_105 not in the Motif Atlas

Homologous match to HL_5J7L_212

Geometric discrepancy: 0.2424

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7S1H|1|I|G|1091
7S1H|1|I|C|1092
7S1H|1|I|G|1093
7S1H|1|I|U|1094
7S1H|1|I|A|1095
7S1H|1|I|A|1096
7S1H|1|I|U|1097
7S1H|1|I|A|1098
7S1H|1|I|G|1099
7S1H|1|I|C|1100

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain m

50S ribosomal protein L36