HL_7S1J_037

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1J_037 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1014

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7S1J|1|I|U|158
7S1J|1|I|G|159
7S1J|1|I|A|160
7S1J|1|I|A|161
7S1J|1|I|U|162
7S1J|1|I|C|163
7S1J|1|I|C|164
7S1J|1|I|A|165
7S1J|1|I|U|166
7S1J|1|I|A|167
7S1J|1|I|G|168

Current chains

Chain I

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L28