HL_7S9U_054

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGUAAAGGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S9U_054 not in the Motif Atlas

Geometric match to HL_3IVK_004

Geometric discrepancy: 0.3847

The information below is about HL_3IVK_004

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7S9U|1|A|G|2352
7S9U|1|A|U|2353
7S9U|1|A|G|2354
7S9U|1|A|U|2355
7S9U|1|A|A|2356
7S9U|1|A|A|2357
7S9U|1|A|A|2358
7S9U|1|A|G|2359
7S9U|1|A|G|2360
7S9U|1|A|C|2361

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain V

50S ribosomal protein L27