HL_7SS9_005

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.3393

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7SS9|1|1|U|158
7SS9|1|1|G|159
7SS9|1|1|A|160
7SS9|1|1|A|161
7SS9|1|1|U|162
7SS9|1|1|C|163
7SS9|1|1|C|164
7SS9|1|1|A|165
7SS9|1|1|U|166
7SS9|1|1|A|167
7SS9|1|1|G|168

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28