HL_7SS9_019

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCUUAACUGGG

Length

11 nucleotides

Bulged bases

7SS9|1|1|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_019 not in the Motif Atlas

Geometric match to HL_4TUE_219

Geometric discrepancy: 0.3781

The information below is about HL_4TUE_219

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7SS9|1|1|U|639
7SS9|1|1|C|640
7SS9|1|1|U|641
7SS9|1|1|U|642
7SS9|1|1|A|643
7SS9|1|1|A|644
7SS9|1|1|C|645
7SS9|1|1|U|646
7SS9|1|1|G|647
7SS9|1|1|G|648
7SS9|1|1|G|649

Current chains

Chain 1

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L33

Chain E

50S ribosomal protein L35

Chain l

50S ribosomal protein L15