HL_7SS9_048

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7SS9|1|1|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_048 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.2054

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7SS9|1|1|G|1949
7SS9|1|1|G|1950
7SS9|1|1|U|1951
7SS9|1|1|A|1952
7SS9|1|1|A|1953
7SS9|1|1|G|1954
7SS9|1|1|U|1955
7SS9|1|1|U|1956
7SS9|1|1|C|1957

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain k

50S ribosomal protein L14