HL_7SS9_066

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

7SS9|1|1|U|2797, 7SS9|1|1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_066 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3606

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

7SS9|1|1|C|2795
7SS9|1|1|U|2796
7SS9|1|1|U|2797
7SS9|1|1|U|2798
7SS9|1|1|A|2799
7SS9|1|1|A|2800
7SS9|1|1|G|2801

Current chains

Chain 1

23S rRNA

Nearby chains