HL_7SS9_127
3D structure
- PDB id
- 7SS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late translocation intermediate with EF-G partially dissociated (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUGGGA
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SS9_127 not in the Motif Atlas
- Geometric match to HL_5VPO_138
- Geometric discrepancy: 0.2943
- The information below is about HL_5VPO_138
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_46333.1
- Basepair signature
- cWW-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
7SS9|1|5|U|32
7SS9|1|5|U|33
7SS9|1|5|U|34
7SS9|1|5|G|35
7SS9|1|5|G|36
7SS9|1|5|G|37
7SS9|1|5|A|38
Current chains
- Chain 5
- tRNA Pro
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- mRNA
- Chain 6
- Transfer RNA; tRNA
- Chain 8
- Elongation factor G
- Chain N
- 30S ribosomal protein S9
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