HL_7SSD_005

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_005 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.2827

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7SSD|1|1|U|158
7SSD|1|1|G|159
7SSD|1|1|A|160
7SSD|1|1|A|161
7SSD|1|1|U|162
7SSD|1|1|C|163
7SSD|1|1|C|164
7SSD|1|1|A|165
7SSD|1|1|U|166
7SSD|1|1|A|167
7SSD|1|1|G|168

Current chains

Chain 1

23S rRNA

Nearby chains

Chain x

50S ribosomal protein L28