HL_7SSO_040

3D structure

PDB id

7SSO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation 70S ribosome with A/A and P/E tRNA (Structure II-A)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAGAAU

Length

7 nucleotides

Bulged bases

7SSO|1|1|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSO_040 not in the Motif Atlas

Homologous match to HL_5J7L_174

Geometric discrepancy: 0.1981

The information below is about HL_5J7L_174

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7SSO|1|1|A|1630
7SSO|1|1|G|1631
7SSO|1|1|A|1632
7SSO|1|1|G|1633
7SSO|1|1|A|1634
7SSO|1|1|A|1635
7SSO|1|1|U|1636

Current chains

Chain 1

23S rRNA

Nearby chains