HL_7SSW_047

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

7SSW|1|1|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSW_047 not in the Motif Atlas

Homologous match to HL_9DFE_046

Geometric discrepancy: 0.3992

The information below is about HL_9DFE_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7SSW|1|1|G|1910
7SSW|1|1|U|1911
7SSW|1|1|A|1912
7SSW|1|1|A|1913
7SSW|1|1|C|1914
7SSW|1|1|U|1915
7SSW|1|1|A|1916
7SSW|1|1|U|1917
7SSW|1|1|A|1918
7SSW|1|1|A|1919
7SSW|1|1|C|1920

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain 5

Transfer RNA; tRNA

Chain Q

30S ribosomal protein S12