HL_7SSW_109

3D structure

PDB id

7SSW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G dissociated (Structure VI)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

7SSW|1|1|U|162

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSW_109 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.3404

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7SSW|1|1|U|158
7SSW|1|1|G|159
7SSW|1|1|A|160
7SSW|1|1|A|161
7SSW|1|1|U|162
7SSW|1|1|C|163
7SSW|1|1|C|164
7SSW|1|1|A|165
7SSW|1|1|U|166
7SSW|1|1|A|167
7SSW|1|1|G|168

Current chains

Chain 1

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28