HL_7SUK_001

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

7SUK|1|8|U|159

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SUK_001 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.1802

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7SUK|1|8|G|154
7SUK|1|8|U|155
7SUK|1|8|A|156
7SUK|1|8|A|157
7SUK|1|8|U|158
7SUK|1|8|U|159
7SUK|1|8|C|160

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain L6

40S ribosomal protein S6-A

Chain LX

RNA cytidine acetyltransferase