HL_7SUK_009

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

UAAUUCA

Length

7 nucleotides

Bulged bases

7SUK|1|8|U|454, 7SUK|1|8|C|455

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SUK_009 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.22

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7SUK|1|8|U|450
7SUK|1|8|A|451
7SUK|1|8|A|452
7SUK|1|8|U|453
7SUK|1|8|U|454
7SUK|1|8|C|455
7SUK|1|8|A|456

Current chains

Chain 8

18S pre-rRNA

Nearby chains

Chain L4

40S ribosomal protein S4-A

Chain LF

40S ribosomal protein S24-A

Chain SP

U3 small nucleolar RNA-associated protein 20