HL_7SUK_028

3D structure

PDB id

7SUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells

Experimental method

ELECTRON MICROSCOPY

Resolution

3.99 Å

Loop

Sequence

AAGAAAUU

Length

8 nucleotides

Bulged bases

7SUK|1|L0|A|198

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SUK_028 not in the Motif Atlas

Geometric match to HL_6D12_002

Geometric discrepancy: 0.3314

The information below is about HL_6D12_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.4

Basepair signature

cWW-F-F

Number of instances in this motif group

20

Unit IDs

7SUK|1|L0|A|195
7SUK|1|L0|A|196
7SUK|1|L0|G|197
7SUK|1|L0|A|198
7SUK|1|L0|A|199
7SUK|1|L0|A|200
7SUK|1|L0|U|201
7SUK|1|L0|U|202

Current chains

Chain L0

5' ETS

Nearby chains

Chain SV

Regulator of rDNA transcription protein 14

Chain SY

U3 small nucleolar RNA-associated protein 11