HL_7SYG_028

3D structure

PDB id

7SYG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 1(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7SYG|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYG_028 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.2454

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7SYG|1|2|G|1366
7SYG|1|2|U|1367
7SYG|1|2|U|1368
7SYG|1|2|A|1369
7SYG|1|2|A|1370
7SYG|1|2|U|1371
7SYG|1|2|U|1372
7SYG|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17