HL_7SYH_009

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

7SYH|1|2|A|448, 7SYH|1|2|C|450, 7SYH|1|2|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYH_009 not in the Motif Atlas

Geometric match to HL_4V88_195

Geometric discrepancy: 0.2016

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYH|1|2|C|441
7SYH|1|2|C|442
7SYH|1|2|U|443
7SYH|1|2|G|444
7SYH|1|2|A|445
7SYH|1|2|G|446
7SYH|1|2|A|447
7SYH|1|2|A|448
7SYH|1|2|A|449
7SYH|1|2|C|450
7SYH|1|2|G|451
7SYH|1|2|G|452

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain H

eS6

Chain J

eS8