HL_7SYH_021

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYH_021 not in the Motif Atlas

Geometric match to HL_4V88_208

Geometric discrepancy: 0.3387

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7SYH|1|2|G|1054
7SYH|1|2|A|1055
7SYH|1|2|U|1056
7SYH|1|2|C|1057
7SYH|1|2|A|1058
7SYH|1|2|G|1059
7SYH|1|2|A|1060
7SYH|1|2|U|1061
7SYH|1|2|A|1062
7SYH|1|2|C|1063
7SYH|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

40S ribosomal protein S26