HL_7SYH_030

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYH_030 not in the Motif Atlas

Geometric match to HL_2CZJ_007

Geometric discrepancy: 0.2208

The information below is about HL_2CZJ_007

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_23696.2

Basepair signature

cWW-F-F

Number of instances in this motif group

8

Unit IDs

7SYH|1|2|C|1460
7SYH|1|2|G|1461
7SYH|1|2|U|1462
7SYH|1|2|U|1463
7SYH|1|2|C|1464
7SYH|1|2|A|1465
7SYH|1|2|G|1466

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17

Chain d

eS28

Chain h

RACK1