HL_7SYH_035

3D structure

PDB id

7SYH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 2(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GGUGAACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYH_035 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3145

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7SYH|1|2|G|1846
7SYH|1|2|G|1847
7SYH|1|2|U|1848
7SYH|1|2|G|1849
7SYH|1|2|A|1850
7SYH|1|2|A|1851
7SYH|1|2|C|1852
7SYH|1|2|C|1853

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain n

60s ribosomal protein l41