HL_7SYI_004

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

7SYI|1|2|C|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYI_004 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2319

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7SYI|1|2|C|196
7SYI|1|2|U|197
7SYI|1|2|U|198
7SYI|1|2|C|199
7SYI|1|2|G|200
7SYI|1|2|C|201
7SYI|1|2|G|202
7SYI|1|2|G|203

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

eS8