HL_7SYI_008

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYI_008 not in the Motif Atlas

Geometric match to HL_4V88_194

Geometric discrepancy: 0.1776

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

7SYI|1|2|U|416
7SYI|1|2|C|417
7SYI|1|2|A|418
7SYI|1|2|G|419
7SYI|1|2|G|420
7SYI|1|2|G|421

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

uS5 (S2)

Chain K

uS4

Chain M

uS17

Chain X

uS8

Chain Y

uS12