HL_7SYI_021

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYI_021 not in the Motif Atlas

Geometric match to HL_4V88_208

Geometric discrepancy: 0.2828

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

7SYI|1|2|G|1054
7SYI|1|2|A|1055
7SYI|1|2|U|1056
7SYI|1|2|C|1057
7SYI|1|2|A|1058
7SYI|1|2|G|1059
7SYI|1|2|A|1060
7SYI|1|2|U|1061
7SYI|1|2|A|1062
7SYI|1|2|C|1063
7SYI|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26 (S26)