HL_7SYI_035

3D structure

PDB id

7SYI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 3(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

GGUGAACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYI_035 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3992

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

7SYI|1|2|G|1846
7SYI|1|2|G|1847
7SYI|1|2|U|1848
7SYI|1|2|G|1849
7SYI|1|2|A|1850
7SYI|1|2|A|1851
7SYI|1|2|C|1852
7SYI|1|2|C|1853

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain n

60s ribosomal protein l41