HL_7SYJ_032

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AUUGCAAUUAUU

Length

12 nucleotides

Bulged bases

7SYJ|1|2|U|1621, 7SYJ|1|2|U|1622, 7SYJ|1|2|A|1623

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYJ_032 not in the Motif Atlas

Homologous match to HL_8C3A_224

Geometric discrepancy: 0.5286

The information below is about HL_8C3A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_03273.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

3

Unit IDs

7SYJ|1|2|A|1614
7SYJ|1|2|U|1615
7SYJ|1|2|U|1616
7SYJ|1|2|G|1617
7SYJ|1|2|C|1618
7SYJ|1|2|A|1619
7SYJ|1|2|A|1620
7SYJ|1|2|U|1621
7SYJ|1|2|U|1622
7SYJ|1|2|A|1623
7SYJ|1|2|U|1624
7SYJ|1|2|U|1625

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain T

uS13

Chain e

eS29