HL_7SYJ_045

3D structure

PDB id

7SYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES binding to the 40S ribosomal subunit, closed conformation. Structure 4(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AUUGAUAGCU

Length

10 nucleotides

Bulged bases

7SYJ|1|2|U|1297, 7SYJ|1|2|G|1298, 7SYJ|1|2|U|1300, 7SYJ|1|2|G|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYJ_045 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.24

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7SYJ|1|2|A|1295
7SYJ|1|2|U|1296
7SYJ|1|2|U|1297
7SYJ|1|2|G|1298
7SYJ|1|2|A|1299
7SYJ|1|2|U|1300
7SYJ|1|2|A|1301
7SYJ|1|2|G|1302
7SYJ|1|2|C|1303
7SYJ|1|2|U|1304

Current chains

Chain 2

18S rRNA

Nearby chains

Chain Q

uS19

Chain e

eS29

Chain g

40S ribosomal protein S27a