HL_7SYM_019

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYM_019 not in the Motif Atlas

Homologous match to HL_8C3A_211

Geometric discrepancy: 0.5138

The information below is about HL_8C3A_211

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7SYM|1|2|A|957
7SYM|1|2|G|958
7SYM|1|2|G|959
7SYM|1|2|U|960
7SYM|1|2|G|961
7SYM|1|2|A|962
7SYM|1|2|A|963
7SYM|1|2|A|964
7SYM|1|2|U|965
7SYM|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain G

uS7

Chain P

uS11