HL_7SYM_025

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

7SYM|1|2|A|1253

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYM_025 not in the Motif Atlas

Geometric match to HL_4V88_212

Geometric discrepancy: 0.3232

The information below is about HL_4V88_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

7SYM|1|2|G|1245
7SYM|1|2|A|1246
7SYM|1|2|C|1247
7SYM|1|2|U|1248
7SYM|1|2|C|1249
7SYM|1|2|A|1250
7SYM|1|2|A|1251
7SYM|1|2|C|1252
7SYM|1|2|A|1253
7SYM|1|2|C|1254

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

uS9

Chain V

uS10

Chain e

eS29