HL_7SYM_043

3D structure

PDB id

7SYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head opening. Structure 7(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

7SYM|1|2|G|821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYM_043 not in the Motif Atlas

Homologous match to HL_8C3A_208

Geometric discrepancy: 0.2139

The information below is about HL_8C3A_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

7SYM|1|2|U|820
7SYM|1|2|G|821
7SYM|1|2|U|822
7SYM|1|2|U|823
7SYM|1|2|C|824
7SYM|1|2|A|825
7SYM|1|2|A|826
7SYM|1|2|A|827
7SYM|1|2|G|828

Current chains

Chain 2

18S rRNA

Nearby chains

Chain F

40S ribosomal protein S4

Chain K

uS4

Chain Z

40S ribosomal protein S24