HL_7SYO_020

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_020 not in the Motif Atlas

Homologous match to HL_8C3A_213

Geometric discrepancy: 0.5328

The information below is about HL_8C3A_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7SYO|1|2|G|1054
7SYO|1|2|A|1055
7SYO|1|2|U|1056
7SYO|1|2|C|1057
7SYO|1|2|A|1058
7SYO|1|2|G|1059
7SYO|1|2|A|1060
7SYO|1|2|U|1061
7SYO|1|2|A|1062
7SYO|1|2|C|1063
7SYO|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26