HL_8C3A_213

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases (A, C, G, U)

989U

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12326.2

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

10

Unit IDs

8C3A|1|CM|G|982
8C3A|1|CM|A|983
8C3A|1|CM|U|984
8C3A|1|CM|C|985
8C3A|1|CM|A|986
8C3A|1|CM|G|987
8C3A|1|CM|A|988
8C3A|1|CM|U|989
8C3A|1|CM|A|990
8C3A|1|CM|C|991
8C3A|1|CM|C|992

Current chains

Chain CM

18S

Nearby chains

Chain AS

Large subunit ribosomal RNA; LSU rRNA

Chain DB

40S ribosomal protein S14-A

Chain DN

40S ribosomal protein S26