HL_7SYO_026

3D structure

PDB id

7SYO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HCV IRES bound to the 40S ribosomal subunit, head open. Structure 9(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7SYO|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYO_026 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.1625

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7SYO|1|2|G|1366
7SYO|1|2|U|1367
7SYO|1|2|U|1368
7SYO|1|2|A|1369
7SYO|1|2|A|1370
7SYO|1|2|U|1371
7SYO|1|2|U|1372
7SYO|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17