HL_7SYP_020

3D structure

PDB id

7SYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome binary complex, open conformation. Structure 10(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

7SYP|1|2|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYP_020 not in the Motif Atlas

Homologous match to HL_8C3A_213

Geometric discrepancy: 0.4894

The information below is about HL_8C3A_213

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7SYP|1|2|G|1054
7SYP|1|2|A|1055
7SYP|1|2|U|1056
7SYP|1|2|C|1057
7SYP|1|2|A|1058
7SYP|1|2|G|1059
7SYP|1|2|A|1060
7SYP|1|2|U|1061
7SYP|1|2|A|1062
7SYP|1|2|C|1063
7SYP|1|2|C|1064

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain b

eS26

Chain z

Internal ribosome entry site; IRES