HL_7SYQ_018

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGGUGAAAUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYQ_018 not in the Motif Atlas

Geometric match to HL_4LFB_015

Geometric discrepancy: 0.2901

The information below is about HL_4LFB_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7SYQ|1|2|A|957
7SYQ|1|2|G|958
7SYQ|1|2|G|959
7SYQ|1|2|U|960
7SYQ|1|2|G|961
7SYQ|1|2|A|962
7SYQ|1|2|A|963
7SYQ|1|2|A|964
7SYQ|1|2|U|965
7SYQ|1|2|U|966

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

uS11

Chain z

Internal ribosome entry site; IRES