HL_7SYQ_027

3D structure

PDB id

7SYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES and 40S ribosome ternary complex, open conformation. Structure 11(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7SYQ|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYQ_027 not in the Motif Atlas

Geometric match to HL_4LFB_025

Geometric discrepancy: 0.167

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7SYQ|1|2|G|1366
7SYQ|1|2|U|1367
7SYQ|1|2|U|1368
7SYQ|1|2|A|1369
7SYQ|1|2|A|1370
7SYQ|1|2|U|1371
7SYQ|1|2|U|1372
7SYQ|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17