HL_7SYS_028

3D structure

PDB id

7SYS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES eIF2-containing 48S initiation complex, closed conformation. Structure 12(delta dII).

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7SYS|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYS_028 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.1479

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7SYS|1|2|G|1366
7SYS|1|2|U|1367
7SYS|1|2|U|1368
7SYS|1|2|A|1369
7SYS|1|2|A|1370
7SYS|1|2|U|1371
7SYS|1|2|U|1372
7SYS|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17