HL_7SYU_028

3D structure

PDB id

7SYU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the delta dII IRES w/o eIF2 48S initiation complex, closed conformation. Structure 13(delta dII)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

7SYU|1|2|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYU_028 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.148

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7SYU|1|2|G|1366
7SYU|1|2|U|1367
7SYU|1|2|U|1368
7SYU|1|2|A|1369
7SYU|1|2|A|1370
7SYU|1|2|U|1371
7SYU|1|2|U|1372
7SYU|1|2|C|1373

Current chains

Chain 2

18S rRNA

Nearby chains

Chain S

eS17