HL_7SYV_035

3D structure

PDB id

7SYV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the wt IRES eIF5B-containing pre-48S initiation complex, open conformation. Structure 14(wt)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGCGGAAG

Length

9 nucleotides

Bulged bases

7SYV|1|i|G|17, 7SYV|1|i|G|18, 7SYV|1|i|A|19, 7SYV|1|i|A|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SYV_035 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.2096

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_57684.1

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7SYV|1|i|C|13
7SYV|1|i|A|14
7SYV|1|i|G|15
7SYV|1|i|C|16
7SYV|1|i|G|17
7SYV|1|i|G|18
7SYV|1|i|A|19
7SYV|1|i|A|20
7SYV|1|i|G|21

Current chains

Chain i

Met-tRNA-i-Met

Nearby chains