HL_7TM3_025

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7TM3|1|K|A|1630, 7TM3|1|K|G|1633

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_025 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.0941

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7TM3|1|K|G|1627
7TM3|1|K|C|1628
7TM3|1|K|G|1629
7TM3|1|K|A|1630
7TM3|1|K|A|1631
7TM3|1|K|A|1632
7TM3|1|K|G|1633
7TM3|1|K|A|1634
7TM3|1|K|C|1635

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein L8

Chain N

Ribosomal protein L15

Chain j

Ribosomal protein L37