HL_7TM3_058

3D structure

PDB id

7TM3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD Rhodopsin intermediate in complex with the multipass translocon

Experimental method

ELECTRON MICROSCOPY

Resolution

3.25 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

7TM3|1|K|A|4214, 7TM3|1|K|C|4221

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TM3_058 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.1346

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7TM3|1|K|U|4210
7TM3|1|K|C|4211
7TM3|1|K|A|4212
7TM3|1|K|A|4213
7TM3|1|K|A|4214
7TM3|1|K|C|4215
7TM3|1|K|G|4216
7TM3|1|K|G|4217
7TM3|1|K|U|4218
7TM3|1|K|A|4219
7TM3|1|K|A|4220
7TM3|1|K|C|4221
7TM3|1|K|G|4222

Current chains

Chain K

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain T

eL21

Chain b

eL29