HL_7TOO_020
3D structure
- PDB id
- 7TOO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 7TOO|1|A25S|U|879, 7TOO|1|A25S|A|883, 7TOO|1|A25S|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7TOO_020 not in the Motif Atlas
- Homologous match to HL_8C3A_020
- Geometric discrepancy: 0.0976
- The information below is about HL_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_39334.8
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
7TOO|1|A25S|A|876
7TOO|1|A25S|C|877
7TOO|1|A25S|G|878
7TOO|1|A25S|U|879
7TOO|1|A25S|G|880
7TOO|1|A25S|C|881
7TOO|1|A25S|A|882
7TOO|1|A25S|A|883
7TOO|1|A25S|A|884
7TOO|1|A25S|U|885
Current chains
- Chain A25S
- 25S rRNA
Nearby chains
- Chain AGR
- ALS-FTD-associated dipeptide repeat protein, GR20
- Chain AL03
- RPL3 isoform 1
- Chain AL17
- 60S ribosomal protein L17-A
- Chain AL37
- 60S ribosomal protein L37-A
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