HL_7TOO_046

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UCUAAUUAAAA

Length

11 nucleotides

Bulged bases

7TOO|1|A25S|A|2138, 7TOO|1|A25S|A|2139, 7TOO|1|A25S|U|2140, 7TOO|1|A25S|A|2144

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_046 not in the Motif Atlas

Homologous match to HL_8C3A_046

Geometric discrepancy: 0.1241

The information below is about HL_8C3A_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_43613.6

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7TOO|1|A25S|U|2135
7TOO|1|A25S|C|2136
7TOO|1|A25S|U|2137
7TOO|1|A25S|A|2138
7TOO|1|A25S|A|2139
7TOO|1|A25S|U|2140
7TOO|1|A25S|U|2141
7TOO|1|A25S|A|2142
7TOO|1|A25S|A|2143
7TOO|1|A25S|A|2144
7TOO|1|A25S|A|2145

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AGR

ALS-FTD-associated dipeptide repeat protein, GR20

Chain AL02

60S ribosomal protein L2-A

Chain AL37

60S ribosomal protein L37-A