HL_7TOO_049

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

7TOO|1|A25S|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_049 not in the Motif Atlas

Homologous match to HL_8C3A_049

Geometric discrepancy: 0.2814

The information below is about HL_8C3A_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7TOO|1|A25S|G|2253
7TOO|1|A25S|U|2254
7TOO|1|A25S|A|2255
7TOO|1|A25S|A|2256
7TOO|1|A25S|C|2257
7TOO|1|A25S|U|2258
7TOO|1|A25S|A|2259
7TOO|1|A25S|U|2260
7TOO|1|A25S|G|2261
7TOO|1|A25S|A|2262
7TOO|1|A25S|C|2263

Current chains

Chain A25S

25S rRNA

Nearby chains