HL_7TOO_062

3D structure

PDB id

7TOO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein GR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOO_062 not in the Motif Atlas

Homologous match to HL_8C3A_062

Geometric discrepancy: 0.2134

The information below is about HL_8C3A_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7TOO|1|A25S|C|2840
7TOO|1|A25S|G|2841
7TOO|1|A25S|U|2842
7TOO|1|A25S|U|2843
7TOO|1|A25S|C|2844
7TOO|1|A25S|A|2845
7TOO|1|A25S|U|2846
7TOO|1|A25S|A|2847
7TOO|1|A25S|G|2848

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL09

60S ribosomal protein L9-A

Chain AL10

RPL10 isoform 1

Chain AL40

Ubiquitin-60S ribosomal protein L40