HL_7TOP_020

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

7TOP|1|A25S|U|879, 7TOP|1|A25S|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_020 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.088

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

7TOP|1|A25S|A|876
7TOP|1|A25S|C|877
7TOP|1|A25S|G|878
7TOP|1|A25S|U|879
7TOP|1|A25S|G|880
7TOP|1|A25S|C|881
7TOP|1|A25S|A|882
7TOP|1|A25S|A|883
7TOP|1|A25S|A|884
7TOP|1|A25S|U|885

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL03

RPL3 isoform 1

Chain AL17

60S ribosomal protein L17-A

Chain AL37

60S ribosomal protein L37-A

Chain PR

PR20