HL_7TOP_021

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

7TOP|1|A25S|A|913, 7TOP|1|A25S|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_021 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.0978

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7TOP|1|A25S|G|910
7TOP|1|A25S|C|911
7TOP|1|A25S|G|912
7TOP|1|A25S|A|913
7TOP|1|A25S|A|914
7TOP|1|A25S|A|915
7TOP|1|A25S|G|916
7TOP|1|A25S|A|917
7TOP|1|A25S|C|918

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L2-A

Chain AL15

60S ribosomal protein L15-A

Chain AL37

60S ribosomal protein L37-A