HL_7TOP_024

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

7TOP|1|A25S|U|1081

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_024 not in the Motif Atlas

Geometric match to HL_5TBW_024

Geometric discrepancy: 0.1027

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

7TOP|1|A25S|C|1076
7TOP|1|A25S|U|1077
7TOP|1|A25S|U|1078
7TOP|1|A25S|A|1079
7TOP|1|A25S|A|1080
7TOP|1|A25S|U|1081
7TOP|1|A25S|U|1082
7TOP|1|A25S|G|1083

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL05

RPL5 isoform 1

Chain AL21

60S ribosomal protein L21-A

Chain AL29

RPL29 isoform 1