HL_7TOP_050

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

7TOP|1|A25S|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_050 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0893

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

7TOP|1|A25S|U|2292
7TOP|1|A25S|C|2293
7TOP|1|A25S|U|2294
7TOP|1|A25S|A|2295
7TOP|1|A25S|A|2296
7TOP|1|A25S|U|2297
7TOP|1|A25S|U|2298
7TOP|1|A25S|A|2299
7TOP|1|A25S|G|2300

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL23

60S ribosomal protein L23-A