HL_7TOP_056

3D structure

PDB id

7TOP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

7TOP|1|A25S|A|2637, 7TOP|1|A25S|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7TOP_056 not in the Motif Atlas

Homologous match to HL_8C3A_056

Geometric discrepancy: 0.109

The information below is about HL_8C3A_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.9

Basepair signature

cWW-tHH-cWW-tHS-F-F-tWW

Number of instances in this motif group

8

Unit IDs

7TOP|1|A25S|U|2633
7TOP|1|A25S|U|2634
7TOP|1|A25S|A|2635
7TOP|1|A25S|A|2636
7TOP|1|A25S|A|2637
7TOP|1|A25S|C|2638
7TOP|1|A25S|G|2639
7TOP|1|A25S|A|2640
7TOP|1|A25S|U|2641
7TOP|1|A25S|A|2642
7TOP|1|A25S|A|2643
7TOP|1|A25S|C|2644
7TOP|1|A25S|G|2645

Current chains

Chain A25S

25S rRNA

Nearby chains

Chain AL10

RPL10 isoform 1

Chain AL21

60S ribosomal protein L21-A

Chain AL29

RPL29 isoform 1