3D structure

PDB id
7TOP (explore in PDB, NAKB, or RNA 3D Hub)
Description
Yeast 80S ribosome bound with the ALS/FTD-associated dipeptide repeat protein PR20
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CGUUCAUAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7TOP_062 not in the Motif Atlas
Homologous match to HL_8C3A_062
Geometric discrepancy: 0.1954
The information below is about HL_8C3A_062
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_82661.1
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

7TOP|1|A25S|C|2840
7TOP|1|A25S|G|2841
7TOP|1|A25S|U|2842
7TOP|1|A25S|U|2843
7TOP|1|A25S|C|2844
7TOP|1|A25S|A|2845
7TOP|1|A25S|U|2846
7TOP|1|A25S|A|2847
7TOP|1|A25S|G|2848

Current chains

Chain A25S
25S rRNA

Nearby chains

Chain AL10
RPL10 isoform 1
Chain AL40
Ubiquitin-60S ribosomal protein L40

Coloring options:


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